Florian Markowetz: search on Z-Library

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1

Cox-nnet: An artificial neural network method for prognosis prediction of high-throughput omics data

Ching, Travers, Zhu, Xun, Garmire, Lana X., Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 7.07 MB

english, 2018

2

Intratumoral Heterogeneity of Glioblastoma Infiltration Revealed by Joint Histogram Analysis of Diffusion Tensor Imaging

Li, Chao, Wang, Shuo, Yan, Jiun-Lin, Piper, Rory J, Liu, Hongxiang, Torheim, Turid, Kim, Hyunjin, Zou, Jingjing, Boonzaier, Natalie R, Sinha, Rohitashwa, Matys, Tomasz, Markowetz, Florian, Price, Step

Journal:

Year:

2018

Language:

english

File:

PDF, 1.64 MB

english, 2018

3

Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study

Ali, H. Raza, Chlon, Leon, Pharoah, Paul D. P., Markowetz, Florian, Caldas, Carlos, Ladanyi, Marc

Journal:

Year:

2016

Language:

english

File:

PDF, 6.40 MB

english, 2016

4

Diverse epigenetic strategies interact to control epidermal differentiation

Mulder, Klaas W., Wang, Xin, Escriu, Carles, Ito, Yoko, Schwarz, Roland F., Gillis, Jesse, Sirokmány, Gábor, Donati, Giacomo, Uribe-Lewis, Santiago, Pavlidis, Paul, Murrell, Adele, Markowetz, Florian,

Journal:

Nature Cell Biology

Year:

2012

Language:

english

File:

PDF, 2.19 MB

english, 2012

5

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq

Guertin, Michael J, Cullen, Amy E, Markowetz, Florian, Holding, Andrew N

Journal:

Nucleic Acids Research

Year:

2018

Language:

english

File:

PDF, 2.89 MB

english, 2018

6

Immuno‐phenotypes of Pancreatic Ductal Adenocarcinoma: Meta‐analysis of transcriptional subtypes

Santiago, Ines, Yau, Christopher, Heij, Lara, Middleton, Mark, Markowetz, Florian, Grabsch, Heike I., Dustin, Michael, Sivakumar, Shivan

Journal:

International Journal of Cancer

Year:

2019

Language:

english

File:

PDF, 2.39 MB

english, 2019

7

RedeR: R/Bioconductor package for representing modular structures, nested networks and multiple levels of hierarchical associations

Mauro AA Castro, Xin Wang, Michael NC Fletcher, Kerstin B Meyer, Florian Markowetz

Journal:

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

8

RADIOMIC FEATURES FROM PHYSIOLOGICAL MRI SHOWS IMPROVED ACCURACY OVER STRUCTURAL MRI IN PREDICTING MGMT PROMOTER METHYLATION IN GLIOBLASTOMA

Li, Chao, Wang, Shuo, Markowetz, Florian, Price, Stephen

Journal:

Year:

2018

Language:

english

File:

PDF, 106 KB

english, 2018

9

[IEEE 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Hong Kong, China (2010.12.18-2010.12.21)] 2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - A sparse regulatory network of copy-number driven expression reveals putative breast cancer oncogenes

Yuan, Yinyin, Curtis, Christina, Caldas, Carlos, Markowetz, Florian

Year:

2010

Language:

english

File:

PDF, 755 KB

english, 2010

10

Fused Regression for Multi-source Gene Regulatory Network Inference

Lam, Kari Y., Westrick, Zachary M., Müller, Christian L., Christiaen, Lionel, Bonneau, Richard, Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 3.37 MB

english, 2016

11

Refining cellular pathway models using an ensemble of heterogeneous data sources

Franks, Alexander M., Markowetz, Florian, Airoldi, Edoardo M.

Journal:

The Annals of Applied Statistics

Year:

2018

Language:

english

File:

PDF, 515 KB

english, 2018

12

How to Understand the Cell by Breaking It: Network Analysis of Gene Perturbation Screens

Markowetz, Florian, Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 324 KB

english, 2010

13

phyC: Clustering cancer evolutionary trees

Matsui, Yusuke, Niida, Atsushi, Uchi, Ryutaro, Mimori, Koshi, Miyano, Satoru, Shimamura, Teppei, Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 5.81 MB

english, 2017

14

Estimating the predictability of cancer evolution

Hosseini, Sayed-Rzgar, Diaz-Uriarte, Ramon, Markowetz, Florian, Beerenwinkel, Niko

Journal:

Year:

2019

Language:

english

File:

PDF, 560 KB

english, 2019

15

Systems Genetics (Linking Genotypes and Phenotypes) || High-content screening in infectious diseases: new drugs against bugs

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 2.12 MB

english, 2015

16

Intra-tumor heterogeneity defines treatment-resistant HER2+ breast tumors

Rye, Inga H., Trinh, Anne, Saetersdal, Anna B., Nebdal, Daniel, Lingjaerde, Ole Christian, Almendro, Vanessa, Polyak, Kornelia, Børresen-Dale, Anne-Lise, Helland, Åslaug, Markowetz, Florian, Russnes,

Journal:

Molecular Oncology

Year:

2018

File:

PDF, 1.30 MB

2018

17

Mapping Dynamic Histone Acetylation Patterns to Gene Expression in Nanog-Depleted Murine Embryonic Stem Cells

Markowetz, Florian, Mulder, Klaas W., Airoldi, Edoardo M., Lemischka, Ihor R., Troyanskaya, Olga G., Ioshikhes, Ilya

Journal:

PLoS Computational Biology

Year:

2010

Language:

english

File:

PDF, 1.45 MB

english, 2010

18

Inferring structural variant cancer cell fraction

Cmero, Marek, Yuan, Ke, Ong, Cheng Soon, SchrÃ¶der, Jan, Corcoran, Niall M., Papenfuss, Tony, Hovens, Christopher M., Markowetz, Florian, Macintyre, Geoff

Journal:

Nature Communications

Year:

2020

File:

PDF, 1.88 MB

2020

19

Sparse discriminative latent characteristics for predicting cancer drug sensitivity from genomic features

Knowles, David A., Bouchard, Gina, Plevritis, Sylvia, Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2019

Language:

english

File:

PDF, 3.15 MB

english, 2019

20

Tissue-specific and interpretable sub-segmentation of whole tumour burden on CT images by unsupervised fuzzy clustering

Rundo, Leonardo, Beer, Lucian, Ursprung, Stephan, Martin-Gonzalez, Paula, Markowetz, Florian, Brenton, James D., Crispin-Ortuzar, Mireia, Sala, Evis, Woitek, Ramona

Journal:

Computers in Biology and Medicine

Year:

2020

File:

PDF, 12.80 MB

2020

21

Computational identification of cellular networks and pathways

Markowetz, Florian, Troyanskaya, Olga G.

Journal:

Molecular BioSystems

Year:

2007

Language:

english

File:

PDF, 166 KB

english, 2007

22

SANTA: Quantifying the Functional Content of Molecular Networks

Cornish, Alex J., Markowetz, Florian, Stelling, Jorg

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 929 KB

english, 2014

23

Regulators of genetic risk of breast cancer identified by integrative network analysis

Castro, Mauro A A, de Santiago, Ines, Campbell, Thomas M, Vaughn, Courtney, Hickey, Theresa E, Ross, Edith, Tilley, Wayne D, Markowetz, Florian, Ponder, Bruce A J, Meyer, Kerstin B

Journal:

Nature Genetics

Year:

2015

Language:

english

File:

PDF, 1.70 MB

english, 2015

24

Five selfish reasons to work reproducibly

Markowetz, Florian

Journal:

Year:

2015

Language:

english

File:

PDF, 343 KB

english, 2015

25

Decoding the Interdependence of Multiparametric Magnetic Resonance Imaging to Reveal Patient Subgroups Correlated with Survivals

Li, Chao, Wang, Shuo, Liu, Pan, Torheim, Turid, Boonzaier, Natalie R., van Dijken, Bart RJ, Schönlieb, Carola-Bibiane, Markowetz, Florian, Price, Stephen J.

Journal:

Year:

2019

Language:

english

File:

PDF, 1.64 MB

english, 2019

26

Differential C3NET reveals disease networks of direct physical interactions

Gökmen Altay, Mohammad Asim, Florian Markowetz, David E Neal

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.22 MB

english, 2011

27

SuperFreq: Integrated mutation detection and clonal tracking in cancer

Flensburg, Christoffer, Sargeant, Tobias, Oshlack, Alicia, Majewski, Ian J., Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 3.86 MB

2020

28

Inferring cellular networks – a review

Florian Markowetz, Rainer Spang

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 502 KB

english, 2007

29

Structure Learning in Nested Effects Models

Tresch, Achim, Markowetz, Florian

Journal:

Statistical Applications in Genetics and Molecular Biology

Year:

2008

Language:

english

File:

PDF, 466 KB

english, 2008

30

CBIO-33INVESTIGATING GLIOMA CELL PHENOTYPES WITH SMALL MOLECULES

Polson, Euan, Kuchler, Verena, Abbosh, Christopher, Patel, Anjana, Da Silva, Barbara, Mathew, Ryan, Williams, Jennifer, Ross, Edith, Markowetz, Florian, Bon, Robin, Allison, Simon, Chumas, Paul, Lorge

Journal:

Year:

2015

Language:

english

File:

PDF, 24 KB

english, 2015

31

A phylogenetic latent feature model for clonal deconvolution

Marass, Francesco, Mouliere, Florent, Yuan, Ke, Rosenfeld, Nitzan, Markowetz, Florian

Journal:

The Annals of Applied Statistics

Year:

2016

Language:

english

File:

PDF, 780 KB

english, 2016

32

Correction to: VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer

Holding, Andrew N., Giorgi, Federico M., Donnelly, Amanda, Cullen, Amy E., Nagarajan, Sankari, Selth, Luke A., Markowetz, Florian

Journal:

Year:

2019

Language:

english

File:

PDF, 523 KB

english, 2019

33

VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer

Holding, Andrew N., Giorgi, Federico M., Donnelly, Amanda, Cullen, Amy E., Nagarajan, Sankari, Selth, Luke A., Markowetz, Florian

Journal:

Year:

2019

File:

PDF, 4.08 MB

2019

34

Acetylcysteine for prevention of contrast nephropathy: meta-analysis

Rainer Birck, Stefan Krzossok, Florian Markowetz, Peter Schnülle, Fokko J van der Woude, Claude Braun

Journal:

Year:

2003

Language:

english

File:

PDF, 124 KB

english, 2003

35

Posterior Association Networks and Functional Modules Inferred from Rich Phenotypes of Gene Perturbations

Wang, Xin, Castro, Mauro A., Mulder, Klaas W., Markowetz, Florian, Rzhetsky, Andrey

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.08 MB

english, 2012

36

GoIFISH: a system for the quantification of single cell heterogeneity from IFISH images

Trinh, Anne, Rye, Inga H, Almendro, Vanessa, Helland, Åslaug, Russnes, Hege G, Markowetz, Florian

Journal:

Year:

2014

Language:

english

File:

PDF, 3.35 MB

english, 2014

37

OncoNEM: inferring tumor evolution from single-cell sequencing data

Ross, Edith M., Markowetz, Florian

Journal:

Year:

2016

Language:

english

File:

PDF, 1.76 MB

english, 2016

38

Reconstructing evolving signalling networks by hidden Markov nested effects models

Wang, Xin, Yuan, Ke, Hellmayr, Christoph, Liu, Wei, Markowetz, Florian

Journal:

The Annals of Applied Statistics

Year:

2014

Language:

english

File:

PDF, 2.58 MB

english, 2014

39

Systems Genetics (Linking Genotypes and Phenotypes) || An introduction to systems genetics

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 971 KB

english, 2015

40

Systems Genetics (Linking Genotypes and Phenotypes) || Computational paradigms for analyzing genetic interaction networks

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 341 KB

english, 2015

41

Systems Genetics (Linking Genotypes and Phenotypes) || Plate Section

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 11.21 MB

english, 2015

42

Support Vector Machines for Protein Fold Class Prediction

Florian Markowetz, Lutz Edler, Martin Vingron

Journal:

Biometrical Journal

Year:

2003

Language:

english

File:

PDF, 109 KB

english, 2003

43

Patient-Specific Data Fusion Defines Prognostic Cancer Subtypes

Yuan, Yinyin, Savage, Richard S., Markowetz, Florian, Markel, Scott

Journal:

PLoS Computational Biology

Year:

2011

Language:

english

File:

PDF, 2.38 MB

english, 2011

44

Systems Genetics (Linking Genotypes and Phenotypes) || Mapping genetic interactions across many phenotypes in metazoan cells

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 1.76 MB

english, 2015

45

A saltationist theory of cancer evolution

Markowetz, Florian

Journal:

Nature Genetics

Year:

2016

Language:

english

File:

PDF, 254 KB

english, 2016

46

Systems Genetics (Linking Genotypes and Phenotypes) || Genetic interactions and network reliability

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 363 KB

english, 2015

47

Allele-specific multi-sample copy number segmentation in ASCAT

Ross, Edith M, Haase, Kerstin, Van Loo, Peter, Markowetz, Florian, Cowen, Lenore

Journal:

Year:

2020

File:

PDF, 277 KB

2020

48

Master regulators of FGFR2 signalling and breast cancer risk

Fletcher, Michael N. C., Castro, Mauro A. A., Wang, Xin, de Santiago, Ines, O’Reilly, Martin, Chin, Suet-Feung, Rueda, Oscar M., Caldas, Carlos, Ponder, Bruce A. J., Markowetz, Florian, Meyer, Kerstin

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 1.19 MB

english, 2013

49

Systems Genetics (Linking Genotypes and Phenotypes) || Synthetic lethality and chemoresistance in cancer

Markowetz, Florian, Boutros, Michael

Year:

2015

Language:

english

File:

PDF, 427 KB

english, 2015

50

Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks

Li, Ye Henry, Li, Dangna, Samusik, Nikolay, Wang, Xiaowei, Guan, Leying, Nolan, Garry P., Wong, Wing Hung, Markowetz, Florian

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 9.56 MB

english, 2017

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